ITK-Snap

Tips and tricks for using ITK-snap

As ITK-snap is heavily graphics and interactive, it is generally recommended to run the program from a VGL node. However, it does reasonably well on other nodes. So if you feel you need the additional memory – running from e.g. a bigmem-node is fine ..

# – How to launch (on VGLnode) – #
Open VGL-Node (see Nodes-page)
cd /dtu/3d-imaging-center/
. shortcuts/itk-snap.sh

# – How to launch (on other nodes) – #
Open node (see Nodes-page)
cd /dtu/3d-imaging-center/QIM/itk-snap/bin
itk-snap

# – File type support – #
As ITK-snap is originally made for neuroimaging, the supported formats are more medically oriented, e.g.
.nii
.img
.dcm
…

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