FIJI

Tips and tricks for using FIJI / ImageJ

# – How to launch – #

• Launch a terminal on a VGL-node / graphics node:
• Navigate to the 3DIM folder:
• cd /dtu/3d-imaging-center/
• Launch the activation shell script:
• . shortcuts/fiji.sh

# – How to launch with more memory- #

• Launch a terminal on a bigmem-node:
• Navigate to this 3DIM folder:
• /dtu/3d-imaging-center/QIM/conda/
• Call the following commands:
• . conda_init.sh
• conda activate env-viz
• cd /dtu/3d-imaging-center/projects/
• ImageJ –heap 64GB