This workshop is primarily for MAX IV users who are interested in an introduction to the QIM Platform and the qim3d Python library. If you have 3D image data from an imaging facility and would like to join the workshop please contact us via info@qim.dk
Workshop content (see agenda in more detail below):
- Introduction to the platform interface
- Data import procedures
- Collaboration on code and data
- Standard tools for 3D image analysis
Workshop Dates:
- Thursday, March 27th, 9-11 AM
- Thursday, April 24th, 9-11 AM
Both workshops will cover the same content, so attend the one that suits you best. To make the most of the workshop, please ensure you have a DTU Guest account.
Agenda
Introduction
- Introduction to the Qim Center
- Available infrastructure at DTU Compute
- Qim platform
- The qim3d library
Break
- During the break, attendants can log in to the platform and/or install the qim3d library locally
Practical session
- Jupyter launcher
- Visualization tools
- Simple segmentation pipeline
- OME-Zarr format
Questions