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BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20260119T093000
DTEND;TZID=Europe/Copenhagen:20260119T120000
DTSTAMP:20260418T144142
CREATED:20251111T075813Z
LAST-MODIFIED:20260116T081418Z
UID:1895-1768815000-1768824000@qim.dk
SUMMARY:QIM Satellite Meeting - Reproducible Analysis Pipelines: From Data Acquisition to Publication
DESCRIPTION:This satellite meeting explores how reproducible analysis pipelines can link imaging data acquisition at MAX IV beamlines to transparent\, publishable results. Participants will see how the QIM project supports reproducible\, automated\, and shareable workflows tailored to imaging\, with demonstrations of tools such as the qim3d Python library and the analysis platform\, along with real-world examples from imaging-focused beamlines\, including DanMAX and ForMAX.\n \nThe QIM Satellite Meeting features a morning program of short presentations by invited speakers\, followed by a joint discussion session:\n\n\n\n\n \n \n\n\n\n\n09:30\nAnders Dahl\n\n\n09:45\nJoachim Schnadt\n\n\n10:00\nThorbjørn Erik\n\n\n10:15\nJakob Sauer\n\n\n10:30\nFelipe Delestro\n\n\n10:45\nBreak\n\n\n11:00\nArash Panahifar\n\n\n11:15\nMartin Bech\n\n\n11:30\nDiscussion\n\n\n\n\n \n\n\n \nRegistration here:\n  \n 
URL:https://qim.dk/event/qim-satellite-meeting-2026/
LOCATION:The Loop\, The Loop - Rydbergs torg 4\, Lund\, Sweden
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2025/11/Banner-Tall-scaled.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20251020T120000
DTEND;TZID=Europe/Copenhagen:20251021T130000
DTSTAMP:20260418T144142
CREATED:20250911T093739Z
LAST-MODIFIED:20250917T143318Z
UID:1859-1760961600-1761051600@qim.dk
SUMMARY:CIL Reconstruction Workshop – Understanding the Impact on Image Analysis
DESCRIPTION:This workshop is designed for researchers and practitioners working with reconstruction and image analysis across modalities such as X-ray and neutron CT. The focus is on deepening understanding of image reconstruction processes using the CCPi CIL (Core Imaging Library\, https://ccpi.ac.uk/cil/) and exploring how reconstruction choices influence downstream analysis and interpretation. \nParticipants will be introduced to CIL’s capabilities\, including modular reconstruction pipelines\, algorithm selection\, case studies and effect of limited data and common reconstruction artifacts. This lunch-to-lunch event will combine overview lecture with hands-on exercises and discussions. \nWith the event\, we aim to start bridging the gap between reconstruction and image analysis\, fostering better-informed decisions in imaging research. \nAt the end of the workshop\, we will discuss how to further combine and integrate reconstruction and analysis workflows as well as the potential for a larger international workshop involving large-scale imaging facilities and what elements such a workshop could involve. \nThe workshop is physical and will run from lunch-to-lunch on the 20-21st of October. \nWe have a maximum of 20 participants. To join\, please register using this link. If you have any questions\, reach out to organizer Jakob Sauer Jørgensen jakj(a)dtu.dk. \nA detailed program will be sent by email to registered participants. \n 
URL:https://qim.dk/event/cil-reconstruction-workshop-understanding-the-impact-on-image-analysis/
LOCATION:Technical University of Denmark\, Building 101\, Meeting room s16\, Anker Engelundsvej 1\, Kgs. Lyngby\, 2800\, Denmark
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2025/09/Skaermbillede-2025-09-17-163138.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20250622T120000
DTEND;TZID=Europe/Copenhagen:20250622T170000
DTSTAMP:20260418T144142
CREATED:20250401T140638Z
LAST-MODIFIED:20250604T062537Z
UID:1841-1750593600-1750611600@qim.dk
SUMMARY:Challenges in analysis of large image data - A QIM Workshop at SCIA2025 in Reykjavík
DESCRIPTION:The QIM Center will host a workshop at the Scandinavian Conference on Image Analysis 2025*\, to be held at the University of Iceland campus in Reykjavík\, Iceland. The workshop is targeted the SCIA participants and will take place on Sunday\, June 22nd\, preceding the main conference program\, and will focus on the challenges associated with large-scale datasets and their evaluation in image analysis. \nThe development of AI\, particularly in image analysis\, is fundamentally driven by the availability and quality of data. As the volume and complexity of image datasets continue to expand\, it becomes crucial to develop robust methodologies for their effective analysis. Advanced models require extensive datasets for training\, and to enhance their performance\, we need benchmarks that accurately reflect this reality. At this workshop\, you will see examples of how these challenges are being tackled within different data formats and modalities\, and you will have the opportunity to engage in discussing future data requirements to advance AI in image analysis. \nThe workshop will feature poster presentations and invited speakers. Find the program below:  \nProgram\n12:00-12:45: Lunch\n12:45-13:00: Welcome and Introduction\n13:00-13:30: Nico Lang (University of Copenhagen and the Pioneer centre for AI): Learning From Global Earth Observation Data\n13:30-14:00: Björn Þór Jónsson (Reykjavik University): On The Importance of Data Access Patterns\n14:00-14:15: Break\n14:15-14:45: Alexandra Branzan Albu (University of Victoria): Underwater Environmental Monitoring with Computer Vision Methods\n14:45-15:15: Vedrana Andersen Dahl (Technical University of Denmark): Deep-learning-based segmentation for synchrotron 3D imaging: state of the art and challenges\n15:15-15:45: Break\n15:45-16:45: Panel discussion \nThe workshop will take place in room HT-101. \nWe look forward to your participation in Iceland. \n*The workshop will be for participants in SCIA. Registration can only happen through the SCIA registration site. Participants will be charged 300 DKK in addition to the SCIA conference fee to attend. Lunch and drinks are included.
URL:https://qim.dk/event/challenges-in-analysis-of-large-image-data-a-qim-workshop-at-scia2025-in-reykjavik/
LOCATION:University of Iceland – Room HT-101\, 4 Sæmundargata\, Reykjavík\, 102\, Iceland
CATEGORIES:Conference,Workshop
ATTACH;FMTTYPE=image/jpeg:https://qim.dk/wp-content/uploads/2025/04/Designer.jpeg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20250424T090000
DTEND;TZID=Europe/Copenhagen:20250424T110000
DTSTAMP:20260418T144142
CREATED:20250214T100932Z
LAST-MODIFIED:20250214T100932Z
UID:1838-1745485200-1745492400@qim.dk
SUMMARY:MAX IV User workshop 2025 #2
DESCRIPTION:This workshop is primarily for MAX IV users who are interested in an introduction to the QIM Platform and the qim3d Python library. If you have 3D image data from an imaging facility and would like to join the workshop please contact us via info@qim.dk \nWorkshop content (see agenda in more detail below): \n\nIntroduction to the platform interface\nData import procedures\nCollaboration on code and data\nStandard tools for 3D image analysis\n\nWorkshop Dates: \n\nThursday\, March 27th\, 9-11 AM\nThursday\, April 24th\, 9-11 AM\n\nBoth workshops will cover the same content\, so attend the one that suits you best. To make the most of the workshop\, please ensure you have a DTU Guest account.  \nAgenda \nIntroduction \n\nIntroduction to the Qim Center\nAvailable infrastructure at DTU Compute\nQim platform\nThe qim3d library\n\nBreak  \n\nDuring the break\, attendants can log in to the platform and/or install the qim3d library locally\n\nPractical session  \n\nJupyter launcher\nVisualization tools\nSimple segmentation pipeline\nOME-Zarr format\n\nQuestions  \n 
URL:https://qim.dk/event/max-iv-user-workshop-2025-2/
LOCATION:Online
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2025/02/library-1.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20250327T090000
DTEND;TZID=Europe/Copenhagen:20250327T110000
DTSTAMP:20260418T144142
CREATED:20250214T100554Z
LAST-MODIFIED:20250214T100554Z
UID:1833-1743066000-1743073200@qim.dk
SUMMARY:MAX IV User workshop 2025 #1
DESCRIPTION:This workshop is primarily for MAX IV users who are interested in an introduction to the QIM Platform and the qim3d Python library. If you have 3D image data from an imaging facility and would like to join the workshop please contact us via info@qim.dk \nWorkshop content (see agenda in more detail below): \n\nIntroduction to the platform interface\nData import procedures\nCollaboration on code and data\nStandard tools for 3D image analysis\n\nWorkshop Dates: \n\nThursday\, March 27th\, 9-11 AM\nThursday\, April 24th\, 9-11 AM\n\nBoth workshops will cover the same content\, so attend the one that suits you best. To make the most of the workshop\, please ensure you have a DTU Guest account.  \nAgenda \nIntroduction \n\nIntroduction to the Qim Center\nAvailable infrastructure at DTU Compute\nQim platform\nThe qim3d library\n\nBreak  \n\nDuring the break\, attendants can log in to the platform and/or install the qim3d library locally\n\nPractical session  \n\nJupyter launcher\nVisualization tools\nSimple segmentation pipeline\nOME-Zarr format\n\nQuestions  \n 
URL:https://qim.dk/event/max-iv-user-workshop-2025-1/
LOCATION:Online
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2025/02/library-1.png
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20241125
DTEND;VALUE=DATE:20241127
DTSTAMP:20260418T144142
CREATED:20241111T132944Z
LAST-MODIFIED:20241112T124614Z
UID:1802-1732496400-1732582799@qim.dk
SUMMARY:Workshop: Advancing Medical Imaging - Integrating AI & Data Sharing for the Human Organ Atlas Hub
DESCRIPTION:25th of November at the Technical University of Denmark – deadline for signing up 19 November (15:00) \nJoin us for the first physical workshop on Integrating AI & Data Sharing for the Human Organ Atlas Hub (HOAHub). As the HOAHub continues to expand\, we have a unique opportunity to enhance quantitative image analysis through collaboration. This workshop will bring together leading experts in bioimaging\, AI\, and biomedical science to discuss and develop cutting-edge tools for efficient data analysis. \nBy fostering a strong network and coordinated efforts\, we aim to set the foundation for advancements in AI-driven segmentation and data sharing. \nDon’t miss this chance to be part of this HOAHub journey where we explore the newest approaches in collaborating on quantitative image analysis and how best to leverage them in a HOAHub context. \nThe workshop is supported by:
URL:https://qim.dk/event/workshop-advancing-medical-imaging-integrating-ai-data-sharing-for-the-human-organ-atlas-hub/
LOCATION:DTU Building 358\, Akademivej 358\, Kgs. Lyngby\, 2800\, Denmark
CATEGORIES:Workshop
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20241022
DTEND;VALUE=DATE:20241025
DTSTAMP:20260418T144142
CREATED:20240620T111520Z
LAST-MODIFIED:20240620T111520Z
UID:1731-1729558800-1729731599@qim.dk
SUMMARY:LINXS Hackathon: SynchroMage: 3D Tomography and Visualisation for Earth's Hidden Treasures – Environment and Climate theme
DESCRIPTION:Join us for this co-organized Hackathon with LINXS and InfraVis. Mark your calendars now and sign up for a hackathon on 3D tomography and visualisation for Earth’s hidden treasures\, organised by the LINXS ECL theme. \nWhen: 22-23 October\, 2024 \nWhere: at LINXS (Scheelevägen 19\, Lund)\, workshop room on the 5th floor \nMore information to follow
URL:https://qim.dk/event/linxs-hackathon-synchromage-3d-tomography-and-visualisation-for-earths-hidden-treasures-environment-and-climate-theme/
LOCATION:LINXS (Scheelevägen 19\, Lund)\, Scheelevägen 19\, Lund\, Sweden
CATEGORIES:Hackathon
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2024/06/Linxs-hackathon.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20240229T123000
DTEND;TZID=Europe/Copenhagen:20240229T163000
DTSTAMP:20260418T144142
CREATED:20240118T125642Z
LAST-MODIFIED:20240118T125642Z
UID:1689-1709209800-1709224200@qim.dk
SUMMARY:Workshop: Human Perception and Advanced Visualization of 3D Medical Imaging Data
DESCRIPTION:Abstract\nThis interactive workshop aims to guide researchers in crafting impactful visualizations that enhance comprehension and communication of complex findings. The workshop encourages active participation from researchers interested in refining their skills and staying up to date with the latest advancements in visualization technologies. By the end of the event\, particip ants will gain practical insights\, enabling them to create visually compelling representations of their 3D imaging data and foster clearer communication and deeper understanding of their research findings. The workshop targets both 3D image data from clinical scanners and data from preclinical imaging of micro and nano-imaging systems like synchrotrons. \nDeadline for registration: 27 February 12:00 (noon) \nNB. It is not possible to attend the workshop online. We plan to share recorded talks after the event. \nOrganizers: \nQIM – Center for Quantification of 3D Imaging data from MAX IV \nInfraVis – The National Research Infrastructure For Data Visualization \nDBI – Danish BioImaging Network \nLINXS – Institute of Advanced Neutron and X-ray Science \nHALRIC – Hanseatic Life Science Research Infrastructure Consortium (funded by the EU-program Interreg Öresund-Kattegat-Skagerrak) \nCIPA – The research infrastructure for Correlative Image Processing and Analysis
URL:https://qim.dk/event/workshop-human-perception-and-advanced-visualization-of-3d-medical-imaging-data/
LOCATION:Frederiksberg Campus\, Festauditoriet A1-01.01\, Bülowsvej 17\, Frederiksberg\, 1870\, Denmark
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2024/01/logos-1-e1705582555184.png
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20230821
DTEND;VALUE=DATE:20230827
DTSTAMP:20260418T144142
CREATED:20230130T150808Z
LAST-MODIFIED:20230501T122155Z
UID:1500-1692579600-1693011599@qim.dk
SUMMARY:CINEMAX: 3D modelling and imaging of material microstructure - PhD summer school
DESCRIPTION:The 8th International Summer School for PhD students\, postdocs and industrial researchers. \nCINEMAX is a summer school where you get the chance to get teaching and hands-on experience with the complete workflow of high-resolution tomography analysis.\nOver 5 days\, you will get introduced to data acquisition\, 3D reconstruction\, segmentation and meshing and\, finally\, 3D modelling of data to extract physical parameters describing mechanical and flow properties. The teaching and the exercises will take place in close interaction with top experts in the field. Exercises will require some basic programming skills\, and will be carried out in a common python environment\, introduced through an e-learning program that the students are required to follow before the school (Introduction to Advanced Tomography on Coursera https:/​/​www.coursera.org/​learn/​cinemaxe). \nSee the description in the DTU Course database: https://kurser.dtu.dk/course/47511 \nOnly € 825 all inclusive Accommodation and all meals included.\n(No additional course fee is charged) \nKey dates\nRegistration deadline: 15 July 2023\n(limited number of participants\, first come – first served)\nPoster abstracts by: 15 August 2023 \nMore information to come!
URL:https://qim.dk/event/cinemax-3d-modelling-and-imaging-of-material-microstructure-phd-summer-school/
CATEGORIES:Summer School
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2023/01/flyer.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20230512T130000
DTEND;TZID=Europe/Copenhagen:20230512T160000
DTSTAMP:20260418T144142
CREATED:20230320T140830Z
LAST-MODIFIED:20230320T141428Z
UID:1608-1683896400-1683907200@qim.dk
SUMMARY:Stakeholder Meeting: Should life scientists learn to program?
DESCRIPTION:To program or not to program? \nThe Stakeholder Meetings are a series of afternoon meetings\, where software producers\, microscope facilities\, and life scientists discuss common goals and needs. \nAt the previous meeting\, we discussed digital platforms. In this meeting\, we will explore the following questions: \n\nCan bioimage analysis tools successfully address the specificities of a wide range of applications (including data analysis) without requiring programming/scripting?\nHow to keep up with the integration of the latest data analysis techniques?\nHow are new developments in machine learning changing the game?\nAre tools such as Python notebooks the right answer to allow users to customise their analysis workflows and immerse non-experts into programming.\nFor companies: Is your software the solution?
URL:https://qim.dk/event/stakeholder-meeting-should-life-scientists-learn-to-program/
LOCATION:Niels Bohr Building\, Jagtvej 128\, København N\, 2200
CATEGORIES:Webinar,Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2023/03/web_image.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20230310T090000
DTEND;TZID=Europe/Copenhagen:20230310T153000
DTSTAMP:20260418T144142
CREATED:20230207T130227Z
LAST-MODIFIED:20230316T143616Z
UID:1521-1678438800-1678462200@qim.dk
SUMMARY:QIM: 3D image analysis - From Foundation to Vision
DESCRIPTION:See the photos from the event \nWorkshop and talks on the need for 3D image analysis and how deep learning can accelerate the translation of volumetric imaging data to quantitative information \nJoin us for a day where we celebrate the advances that we have made in 3D image analysis in the QIM Center’s first five years. You will meet the decision-makers who made QIM possible\, hear fascinating presentations of the newest in 3D imaging classification\, see the first images coming out of the DanMAX beamline at MAX IV\, and be part of discussing the needs in 3D image analysis. The mission of QIM is to help transcend the current limitations of synchrotron usage through data science tools and pipelines for advancing cutting-edge research results in many fields including life science. \nDeadline for registration: Monday 6th of March at noon (12:00) \nThe event is supported by the Capital Region of Denmark and the Danish Data Science Academy \nProgram:\n3D IMAGING AND QUANTIFICATION WORKSHOP \nLocation: Panum: Faculty Club\, meeting room 16.6.16 \n09:00-09:15 – Welcome and networking \n09:15-10:30 – From Lab to Synchrotron – new classification challenges: \n\n3D Imaging Center at DTU & 4D Imaging Lab in Lund\nTomography at MAX IV. Get updated on the DanMAX\, ForMAX\, NanoMAX\, and MedMAX (and GTiMAX) beamline and what it can offer us in the years to come\n\n10:30-10:45 – Break \n10:45-12:00 – Talk and workshop  \n\nHuman Organ Atlas project – whole organs imaged in synchrotrons. Presentation from ESRF by Joseph Brunet\, Post-Doctoral Research Fellow\, University College London\, based at European Synchrotron Radiation Facility (ESRF).\nTools for 3D image analysis workshop (U-net segmentation\, Relation measures\, InSegt\, Structure tensor)\n\n12:00 – 13:00 – LUNCH \n13:15 – 15:30\nNEXT STEP: CENTER FOR QUANTIFICATION OF IMAGING DATA FROM MAX IV 2.0 \nLocation: Holst Auditorium \nThe QIM Center was created five years ago. Join us in celebrating the results\, meet the decision makers who made QIM possible and hear about the plans for the future: \nWelcome: Anders Dahl\, head of QIM and Professor\, Henning Friis Poulsen \nSpeakers  \n\nChairman of the Regional Council\, Lars Gaardhøj\, Capital Region of Denmark\nHead of Department\, ​Professor of Medical Technology\, Liselotte Højgaard\nProvost\, Rasmus Larsen\, Technical University of Denmark\nDean\, Katrine Krogh Andersen\, University of Copenhagen\nPro Vice-Chancellor\, Viktor Öwall\, Lunds University\nLife Science Director\, Marjolein Thunnissen\, MAX IV\nScience Director\, Giovanna Fragneto\, ESS
URL:https://qim.dk/event/qim-3d-image-analysis-from-foundation-to-vision/
LOCATION:Faculty of Health and Science\, University of Copenhagen\, Blegdamsvej 3\, Copenhagen N\, 2200\, Denmark
CATEGORIES:Conference,Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2023/02/crop1.png
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20230308
DTEND;VALUE=DATE:20230311
DTSTAMP:20260418T144142
CREATED:20230202T102353Z
LAST-MODIFIED:20230202T102353Z
UID:1511-1678237200-1678409999@qim.dk
SUMMARY:Tomography Image Analysis Hackathon - with the Structure of Food During Processing working group\, within the Northern Lights on Food theme
DESCRIPTION:QIM will once again join a LINXS Hackathon in the role of image analysis experts helping users extracting details from their 3D data. \nOutline\nScientists with 3D data challenges will meet and work with experts in image visualisation\, image quantification and machine learning to work together to visualise\, quantify and interpret the scientific content in their 3D images. The Hackathon will start with tutorials on machine learning in 3D image analysis before focussed work in small group bringing together data owners and image analysis experts. In addition to identifying solutions and analysis approaches\, establishing continuing collaborations is a usual outcome after 2 days of sitting working closely together. \nTarget audience\nScientists working with x-ray or neutron imaging who would like to learn more about 3D image analysis and/or would like help with image analysis challenges to extract details from their 3D data. The hackathon is in the context of the Northern Lights on Food Theme at LINXS and so there is a focus towards food science related applications\, but we welcome researchers from other fields also\, subject to space. \nPre-requisites\nEach scientist (data owner) participant should come with their own 3D x-ray or neutron tomography data to analyse during the hackathon. To help us prepare and also\, in the event of over-subscription\, to select participants\, please provide a short description of the data and the scientific questions that you are trying to answer with the data (what would you like to extract from the images).\n– 1 page including an image illustrating the data challenge. (If you are interested in participating\, but do not yet have 3D imaging data of your sample\, please contact Stephen Hall to see if it is possible to acquire data before the event) \nAgenda \nWednesday 8th March \n09:00-09:30 Arrival and Welcome \n09:30-12:00 Tutorials on Machine learning techniques applied to 3D image analysis \n12:00-13:00 Lunch \n13:00-17:00 Hackathon: group work to analysis 3D data\, bringing data owners together with image analysis and machine learning experts \nThursday 9th March \n09:00-12:00 Continuing hackathon \n12:00-13:00 Lunch \n13:00-15:00 Continuing hackathon \n15:00-16:00 Wrapping up\, presenting findings and plans for continuation \nThe event is in conjuction to the Friday 10th March “QIM: 3D image analysis – From Foundation to Vision” – 3D imaging and quantification workshop and celebration of the first 5 years of QIM” in Copenhagen. \nSeparate registration page will open soon.
URL:https://qim.dk/event/tomography-image-analysis-hackathon-with-the-structure-of-food-during-processing-working-group-within-the-northern-lights-on-food-theme/
LOCATION:LINXS (Scheelvägen 19\, Lund)\, 5:th floor\, Sweden
CATEGORIES:Hackathon
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2023/02/Linxs-image_2-e1675333319949.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=UTC:20221028T141500
DTEND;TZID=UTC:20221028T170000
DTSTAMP:20260418T144142
CREATED:20221018T132257Z
LAST-MODIFIED:20221018T132257Z
UID:1449-1666966500-1666976400@qim.dk
SUMMARY:Stakeholder meeting #2: Digital platforms
DESCRIPTION:In March we met in Copenhagen to identify the core challenges in microscopy image analysis. One challenge identified was the development of suitable digital platforms\, therefore\, on \nFriday October 28\, 14.15-17.00\,\nIn INCUBA Store Auditorium (5510-103)\, Åbogade 15\, 8200 Aarhus N\nand online \nwe invite everybody to an open meeting on digital platforms to support image analysis for biological research. \nAgenda Stakeholder Meeting #2\nAt this second Stakeholder Meeting\, we will continue our community discussion on how to shape a software environment\, which easily integrates the skills of the programmers\, people with image problems\, researchers\, and companies – in short\, how to optimally shape the digital platforms for supporting microscope image analysis. \nIf you attend physically\, please bring your laptop with you. \nThe agenda includes the following presentations\, followed by an open discussion among all participants: \n\nEuropean Population Imaging Infrastructure (EPI2)\nStefan Klein\, Dept. Of Radiology & Nuclear Medicine Erasmus MC\, Rotterdam\, the Netherlands\nStefan will talk about the use of XNAT for image data management and the FASTR and WORC software for image analysis and machine learning.\nImage processing pipelines at Center for Quantification of Imaging Data from MAX IV\nHans Martin Kjer\, QIM and Dept. of Applied Mathematics and Computer Science\, DTU\nBIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows\nSébastien Tosi\, Head of the Danish Bioimaging Network (DBI) Image Analysis Core Facility\, Faculty of Health and Medical Sciences\, University of Copenhagen\nExperience from building digital platforms at the Alexandra Institute\nMichael Christensen\, Alexandra Institute\nDevelopment and application of image processing pipelines in biomedical research\nDaniel Wüstner\, Dept. of Biochemistry and Molecular Biology (BMB)\, SDUA
URL:https://qim.dk/event/stakeholder-meeting-2-digital-platforms/
LOCATION:INCUBA Store Auditorium\, Åbogade 15\, Aarhus\, 8200\, Denmark
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2022/10/image-stakeholder.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=UTC:20220523T120000
DTEND;TZID=UTC:20220523T130000
DTSTAMP:20260418T144142
CREATED:20220429T114634Z
LAST-MODIFIED:20220429T114634Z
UID:1177-1653307200-1653310800@qim.dk
SUMMARY:HALOS Webinar: Use of HALOS facilities within clinical research (associated event)
DESCRIPTION:What opportunities do the large-scale facilities such as MAXIV and DESY offer for pre-clinical and clinical research? \nOur speakers Bodil Ohlsson\, Anja Schmidt-Christensen (LU)\, Lars Dahlin and Karin Tran Lundmark (LU & Skåne University Hospital) will share their experiences and address aspects such as:\n-What extra value the large-scale facilities have created for their (pre-)clinical research\n-Why they would not have been able to achieve the same results with other technology offered by non-large-scale facilities\n-What they recommend to those who have not used the large-scale facilities in their research yet. \nWhen: 23 May\nWhere: Zoom (registration required)\nDetailed info & registration: https://www.halos.lu.se/calendar/use-halos-facilities-within-clinical-research
URL:https://qim.dk/event/halos-webinar-use-of-halos-facilities-within-clinical-research-associated-event/
CATEGORIES:Webinar
ATTACH;FMTTYPE=image/jpeg:https://qim.dk/wp-content/uploads/2022/04/HALOS-Clinical-Research.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20220427T100000
DTEND;TZID=Europe/Copenhagen:20220428T153000
DTSTAMP:20260418T144142
CREATED:20220324T140621Z
LAST-MODIFIED:20220324T140621Z
UID:1161-1651053600-1651159800@qim.dk
SUMMARY:Northern Lights on Food 3D Image Analysis Hackathon\,
DESCRIPTION:Outline\nFood scientists with 3D data challenges will meet image visualisation and image quantification experts from QIM\, Lund University and RISE to work together to establish a plan how to visualise\, quantify and interpret the scientific content in their 3D images. In addition to identifying solutions and analysis approaches\, establishing continuing collaborations is a usual outcome after 2 days of sitting working closely together. \nTarget audience\nFood Scientists working with x-ray or neutron imaging who would like to learn more about 3D image analysis and/or would like help with image analysis challenges to extract details from their 3D data \nPre-requisites\nEach food scientist participant should come with their own 3D x-ray or neutron tomography data to analyse during the hackathon. To help us prepare and also\, in the event of over-subscription\, to select participants\, please provide a short description of the data and the scientific questions that you are trying to answer with the data (what would you like to extract from the images). \n– 1 page including an image illustrating the data challenge. (If you are interested in participating\, but do not yet have 3D imaging data of your sample\, please contact Stephen Hall to see if it is possible to acquire data before the event) \nRegistration deadline: April 15 \nProgramme\nWednesday 27 April\n10:00-10:30 Welcome coffee and introduction to the hackathon concept\n10:30-11:30 Data owners describe their data and objectives (10 min each)\n11:30-12:30 Image analysis experts give an overview of a selection of visualisation and image analysis tools\n12:30-13:30 Lunch\n13:30-13:45 defining teams & matching data owners with experts\n13:45-14:00 Connection to LUNARC and data upload / software installation\n14:00-15:00 Start exploring data / inspect with various tools\n15:00-15:30 Coffee Break\n15:30 continue group work \ndinner at LINXS \nThursday 28 April:\n09:00-09:30 Summary of previous day’s group work\n09:30-10:30 continue group work\n10:30-11:00 Coffee break\n11:00-12:00 continue group work\n12:00-13:00 Lunch\n13:00-13:30 Summarise & forward plans\n13:30 Continue group work as desired \nOrganizers\nStephen Hall (LINXS & Lund University)\nNiklas Lorén (RISE)\nEmanuel Larsson (Lund University\, QIM)\nAnders Bornholm Dahl (DTU\, QIM)\nJon Sporring (University of Copenhagen\, QIM)
URL:https://qim.dk/event/northern-lights-on-food-3d-image-analysis-hackathon/
LOCATION:LINXS\, Ideon Delta 5\, Lund\, Sweden
CATEGORIES:Hackathon
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20220311T131500
DTEND;TZID=Europe/Copenhagen:20220311T160000
DTSTAMP:20260418T144142
CREATED:20220121T135559Z
LAST-MODIFIED:20220121T135559Z
UID:1128-1647004500-1647014400@qim.dk
SUMMARY:BioImage analysis stakeholder meeting - open for all
DESCRIPTION:Join us at this Stakeholder Meeting to share experiences and views on how we can work together for better science and innovation in the field of bioimage analysis. We will discuss the opportunities for shaping the future of bioimage analysis between the microscope core facilities\, the Alexandra Institute scientists\, and the Industry. Representatives from the three areas will present their experiences and views on how we can work together for better science and innovation in the field of bioimage analysis followed by an open discussion among all participants. \nImage analysis has become a bottleneck in image-based life science. Since 2015 the field of image analysis has achieved considerable breakthroughs with artificial intelligence offering the ability to segment and track objects in images for high-level modeling. \nAt the same time\, the Danish Imaging Core Facilities are expanding rapidly offering better image resolutions\, new modalities\, and automatic sampling\, and life-scientists today have an unprecedented opportunity to see their world in new ways and generate enormous amounts of imaging data. \nAchieving the best in both imaging and analysis is no simple task since it requires expert knowledge in life sciences\, microscope hardware\, artificial intelligence\, and computing resource management. \nThe meeting is open for everyone – read more about the event\, answer the survey and sign up for the stakeholder meeting at the website link to the right
URL:https://qim.dk/event/bioimage-analysis-stakeholder-meeting-open-for-all/
LOCATION:University of Copenhagen\, Department of Computer Science\, specific location to be announced
CATEGORIES:Workshop
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END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20210823
DTEND;VALUE=DATE:20210829
DTSTAMP:20260418T144142
CREATED:20210615T115602Z
LAST-MODIFIED:20210615T120352Z
UID:1070-1629680400-1630112399@qim.dk
SUMMARY:CINEMAX Summer School 2021
DESCRIPTION:The 6th International Summer School August 23 –27 2021\nFor PhD students\, Post Docs and industrial researchers \nCINEMAX VI follows up on the successful CINEMAX I to CINEMAX V summer schools\, where you get the chance to get teaching and hands on experience with the complete workflow of high-resolution tomography analysis. \nOver 5 days\, you will get introduced to data acquisition\, 3D reconstruction\, segmentation and meshing and\, finally\, 3D modelling of data to extract physical parameters describing mechanical and flow properties. The teaching and the exercises will take place in close interaction with top experts in the field. Exercises will require some basic programming skills\, and will be carried out in a common python environment\, introduced through an e-learning program that the students are required to follow before the school. \nDownload the flyer for the summer school \nQIM and HALOS – Hanseatic League of Science – interconnecting infrastructures for life science research and innovation are contributing to the Summer School
URL:https://qim.dk/event/cinemax-summer-school-2021/
LOCATION:Fuglsang Herregaard\, Nystedvej 73\, Toreby\, 4891
CATEGORIES:Summer School
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BEGIN:VEVENT
DTSTART;VALUE=DATE:20210816
DTEND;VALUE=DATE:20210822
DTSTAMP:20260418T144142
CREATED:20210614T141624Z
LAST-MODIFIED:20210614T142756Z
UID:1056-1629075600-1629507599@qim.dk
SUMMARY:DTU\, DIKU & AAU Summer School on Geometric Deep Learning
DESCRIPTION:This will be the thirteenth in a series of summer school programs organized jointly by the Visual Computing section at DTU Compute at the Technical University of Denmark (DTU)\, the Image section at the Department of Computer Science at the University of Copenhagen (KU)\, the Department of Architecture and Media Technology and the Department of Health Science and Technology at Aalborg University (AAU). This year the summer school will be held in Vejle. \nCheck out the programme at the Summer School website \nThe organizers from KU and DTU are part of QIM and the Summer School might be relevant to users and collaborators in QIM
URL:https://qim.dk/event/dtu-diku-aau-summer-school-on-geometric-deep-learning/
CATEGORIES:Summer School
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20210618T110000
DTEND;TZID=Europe/Copenhagen:20210618T160000
DTSTAMP:20260418T144142
CREATED:20210601T085527Z
LAST-MODIFIED:20210601T085527Z
UID:1052-1624014000-1624032000@qim.dk
SUMMARY:HALOS Workshop - Image analysis beyond borders
DESCRIPTION:Join the workshop and listen to presentations and bring your own poster to the virtual theme session rooms (more information about the posters will come soon)! \nWelcome to a full-day workshop organized by HALOS-QIM-CIPA-CSSB!\nPreliminary program\n10.30-10.50 Welcome – Kajsa M. Paulsson (introduce HALOS)\, Anders Sjöström (introduce CIPA)\, Carolin Seuring (intrude CSSB)\, Monica Emerson (introduce QIM) \n10.50-11.10 “Imaging in Life Science” – Tomas Lundqvist\, Sprint Bioscience \n11.10-11.25 “Image analysis in Life Science” – Daniel Wünster\, Odense University \n11.40-11.55 Educational activities for training the next generation of tomography researchers and the need of access to computing clusters – Emanuel Larsson\, Lund University) \n11.55-12.15 TBA \n12.15-12.25 Planning for multimodal imaging experiments – Oxana Klementieva\, Lund University \n12.25-13.00 Lunch \n13.00-13.20 “CryoEM-tomography” – Ulrike Laugks\, Universität Hamburg \n13.20-13.40 “Correlative Light and Electron Microscopy” (CLEM) – Josie Ferreira\, Universität Hamburg \n13.40-14.00 Multi-scale Phase Contrast X-ray Tomography of Biological Tissues – Tim Salditt\, Göttingen University \n14.00-14.20 ‘Analysis – what are the options of handling data\, what are the challenges\, introduction of tools for quantification from QIM with possible outcomes etc’ – Vedrana Andersen Dahl\, DTU \n14.20-14.40 ‘Imaging of Covid-19 infected heart tissue’\, Patric Møller Jensen\, DTU and Marius Reichardt\, Göttingen University \n14.40-15.00 Leg stretch with coffee/tea \n15.00-15.45 Gather web interface with virtual poster session\, “Theme rooms” with industry representatives \n15.45-16.00 Discussion\, summary and concluding remarks
URL:https://qim.dk/event/halos-workshop-image-analysis-beyond-borders/
LOCATION:Online
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20210208
DTEND;VALUE=DATE:20210210
DTSTAMP:20260418T144142
CREATED:20210205T121417Z
LAST-MODIFIED:20210205T121417Z
UID:1040-1612746000-1612832399@qim.dk
SUMMARY:ESRF User Meeting 2021 - Tutorial on Volume Image Analysis
DESCRIPTION:QIM will be part of the Tutorial on Volume Image Analysis at the User Meeting of the European Synchrotron Radiation Facility (ESRF UM 2021). Join us for a lecture and hands-on exercises and tutorials on two of our Software Tools\, Structure Tensor and Layered Surface Detection. Download the material for the hands-on session here.
URL:https://qim.dk/event/esrf-user-meeting-2021-tutorial-on-volume-image-analysis/
LOCATION:Online
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20200930T100000
DTEND;TZID=Europe/Copenhagen:20201001T153000
DTSTAMP:20260418T144142
CREATED:20200825T115608Z
LAST-MODIFIED:20201213T134350Z
UID:989-1601460000-1601566200@qim.dk
SUMMARY:Online Workshop: Machine Learning for Segmentation of 3D Structures
DESCRIPTION:You can now find online in our QIM channel the video recordings for the talks and demos held at the Online Workshop on Machine Learning for Segmentation of 3D Structures the 30th September 2020. \nThis online workshop focuses on segmentation of 3D structures in microscopy images using machine learning. \nYou will learn how to apply state-of-the art machine learning tools to segment your own data. We will focus on the trade-off between annotation effort and segmentation quality\, with an emphasis on “good enough” in reasonable time. \nThe first day of the workshop is a webinar-style presentation of how to apply machine learning tools to various segmentation tasks\, followed by a practical session where you will apply the tools to example data-sets. The second day of the workshop will be in small groups\, where each participant begins segmenting their own data. \nGo to the registration site for information on the program. We hope to see you!
URL:https://qim.dk/event/online-workshop-machine-learning-for-segmentation-of-3d-structures/
CATEGORIES:Workshop
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END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Copenhagen:20200131T090000
DTEND;TZID=Europe/Copenhagen:20200131T130000
DTSTAMP:20260418T144142
CREATED:20191023T055336Z
LAST-MODIFIED:20200805T134248Z
UID:893-1580461200-1580475600@qim.dk
SUMMARY:AI workshop for Image Analysis for specialist (tbc)
DESCRIPTION:Dates to be confirmed \nDescription is coming
URL:https://qim.dk/event/ai-workshop/
LOCATION:3D Imaging Center at DTU\, Building 310\, Kgs. Lyngby\, 2800
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/jpeg:https://qim.dk/wp-content/uploads/2019/10/Machine_LearningCrop.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=UTC:20191023T102000
DTEND;TZID=UTC:20191023T124500
DTSTAMP:20260418T144142
CREATED:20191016T053846Z
LAST-MODIFIED:20191016T053846Z
UID:843-1571826000-1571834700@qim.dk
SUMMARY:QIM Workshop at the Danish Bioimaging Meeting
DESCRIPTION:QIM: the center for quantification of imaging data from MAX IV\, which focus on 3D images microscopic images (http://qim.compute.dtu.dk). We will then introduce tools for 3D image analysis and demonstrate their use on 3D images of biosamples.
URL:https://qim.dk/event/qim-workshop-at-the-danish-bioimaging-meeting/
LOCATION:Aarhus University Hospital\, Auditorium A\, Entrance G\, Palle Juul-Jensens Blvd. 99\, Aarhus\, 8200\, Denmark
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/jpeg:https://qim.dk/wp-content/uploads/2019/10/dbi_cut2.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=UTC:20190919T084500
DTEND;TZID=UTC:20190920T143000
DTSTAMP:20260418T144142
CREATED:20191015T133809Z
LAST-MODIFIED:20191015T133830Z
UID:839-1568882700-1568989800@qim.dk
SUMMARY:Introduction to Volumetric Image Analysis Workshop
DESCRIPTION:This workshop is focused on the analysis of 3D images. At the workshop\, you will gain competences in general image analysis\, necessary in the process of quantitative characterisation of samples. You will be guided through tasks such as image pre-processing\, segmentation and geometry quantification\, up to the visualisation of your results. The only prerequisite for participation is a general interest and need for volumetric image analysis. As we will work with open-source software tools\, you will be able to expand the analyses beyond the workshop. \nOn the second day of the workshop\, you have the possibility of bringing your own volumetric image data. We will happily help you get started on your analysis. If you do not have data yet\, we will provide interesting cases that you can work with.
URL:https://qim.dk/event/introduction-to-volumetric-image-analysis-workshop/
LOCATION:Datalogisk Institut\, Københavns Universitet\, Universitetsparken 1\, København Ø\, 2100
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2019/10/frise_cut.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=UTC:20190502T084500
DTEND;TZID=UTC:20190503T153000
DTSTAMP:20260418T144142
CREATED:20191015T130714Z
LAST-MODIFIED:20191015T130714Z
UID:836-1556786700-1556897400@qim.dk
SUMMARY:2nd Workshop on Fibre Segmentation
DESCRIPTION:On 2nd and 3rd May\, QIM will host the second fibre workshop at DTU with talks and a hands-on session with our tool Insegt Fibre (see Science Cases). As we had a very successful first edition with over 30 attendees\, we have decided to extend the programme with an optional second day. The programme for this year is available at the event page\, where you can also sign up. The deadline for the sign up is the 12th April and there is a limited number of spots. Sign up as soon as possible to not miss out
URL:https://qim.dk/event/2nd-workshop-on-fibre-segmentation/
LOCATION:Technical University of Denmark (DTU)\, Anker Engelunds Vej 101A\, Kgs. Lyngby\, 2800\, Denmark
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/png:https://qim.dk/wp-content/uploads/2019/10/fibre-1.png
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Paris:20190318T093000
DTEND;TZID=Europe/Paris:20190318T093000
DTSTAMP:20260418T144142
CREATED:20191015T124916Z
LAST-MODIFIED:20200805T135744Z
UID:832-1552901400-1552901400@qim.dk
SUMMARY:QIM Kick-off Seminar
DESCRIPTION:The Center for Quantification of Imaging Data from Max IV (QIM) is developing algorithms for quantitative image analysis. The aim of QIM is to support research that involves 3D imaging and quantitative volumetric image analysis for both industrial and clinical applications. \nJoin us at the Kick-off Seminar to learn more about the activities planned at the center. You will be part of discussions about user cases and challenges\, as well as the future direction of the field. We look forward to seeing you.
URL:https://qim.dk/event/qim-kick-off-seminar/
LOCATION:Technical University of Denmark (DTU)\, Anker Engelunds Vej 101A\, Kgs. Lyngby\, 2800\, Denmark
CATEGORIES:Conference
ATTACH;FMTTYPE=image/jpeg:https://qim.dk/wp-content/uploads/2019/10/KickOff_2019-03-18b.jpg
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20180515
DTEND;VALUE=DATE:20180516
DTSTAMP:20260418T144142
CREATED:20191015T115827Z
LAST-MODIFIED:20191015T115827Z
UID:827-1526346000-1526428799@qim.dk
SUMMARY:1st Workshop on Fibre Segmentation
DESCRIPTION:The first workshop on the tool Insegt Fibre was entitled ‘Fibre Reinforced Composites: X-ray Imaging and Advanced Fibre Tracking’. The workshop was held on the 15th May of 2018 at the Henry Moseley X-ray Imaging Facility\, part of the School of Materials from University of Manchester. The event was financed by the Henry Royce Institute and co-organised by Ying Wang and Monica Emerson. \nIn the morning\, a series of talks was conducted by experts in material science\, imaging and data analysis. These covered important aspects of X-ray tomography for fibre reinforced composites\, including sample preparation and in-situ imaging set-ups. The afternoon session consisted of hands-on work with the tool Insegt Fibre. Following two example scripts and a manual\, the attendees worked on 4 data-sets of varying quality and segmented individual fibres from a full unidirectional composite CT scan.
URL:https://qim.dk/event/1st-workshop-on-fibre-segmentation/
LOCATION:Henry Moseley X-ray Imaging Facility\, University of Manchester\, Manchester\, United Kingdom
CATEGORIES:Workshop
ATTACH;FMTTYPE=image/jpeg:https://qim.dk/wp-content/uploads/2019/10/IMG_0197.jpg
END:VEVENT
END:VCALENDAR